Publications

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Preprints

  1. Zhou YC, Lu B, Abebe AG and McCammon JA, Electromechanical Modeling of Membrane Cuvature Induced by Ras Proteins.
  2. Holst M, Tsogtgeral G and Zhou YC, Adaptive Coupling of Finite Element and Boundary Element Methods for a Class of Nonlinear Interface Problems.
  3. Lu B, Holst M, McCammon JA and YC Zhou, Poisson-Nernst-Planck Equations for Simulating Biomolecular Diffusion-Reaction Processes I: Finite Element Solutions.
  4. Wei GW, Sun YH, Zhou YC and Feig M, Multiresolution Molecular Surfaces,

Research articles

  1. Zhou YC, Lu B, Holst M and McCammoon JA, Continuum Simulations of Acetylcholine Consumption by Acetylcholinesterase: A Poisson-Nernst-Planck Approach, Journal of Physical Chemistry B, 112, 270-275, 2008.
  2. Zhou YC, Holst M and McCammon JA, Nonlinear Elastic Modeling of Macromolecular Conformational Change Induced by Electrostatic Forces, Journal of Mathematical Analysis and Applications, 340, 135-164, 2008.
  3. Zhou YC, Feig M and Wei GW, Highly Accurate Biomolecular Electrostatics in Continuum Dielectric Environments, Journal of Computational Chemistry, 29, 87--97, 2008.
  4. Lu B, Zhou YC, Huber GA, Bond SD, Holst M and McCammon JA, Electrodiffusion: A Continuum-modeling Framework for Biomolecular Systems with Realistic Spatiotemporal Resolution, Journal of Chemical Physics, 127, 135102, 2007.
  5. Yu SN, Zhou YC and Wei GW, Matched Interface and Boundary (MIB) Method for Elliptic Problems with Sharp-edged Interfaces, Journal of Computational Physics, 224, 729--756, 2007.
  6. Zhou YC, Wei GW, On the Fictitious-domain and Interpolation Formulations of the Matched Interface and Boundary (MIB) Method, Journal of Computational Physics, 219, 228-246, 2006.
  7. Zhou YC, Zhao S, Feig M and Wei GW, High Order Matched Interface and Boundary (MIB) Method for Elliptic Equations with Discontinuous Coefficients and Singular Sources, Journal of Computational Physics, 213, 1-30, 2006.
  8. Sun YH, Zhou YC, Li SG and Wei GW, A Windowed Fourier Pseudospectral Method for Hyperbolic Conservation Laws, Journal of Computational Physics, 214, 466-490, 2006.
  9. Zhou YC and Wei GW, High Resolution Conjugate Filters for the Simulation of Flows, Journal of Computational Physics, 189, 150-179, 2003.
  10. Zhou YC, Patnaik BSV, Wan DC and Wei GW, DSC Solution for Flow in a Staggered Double Lid Driven Cavity, International Journal for Numerical Methods in Engineering, 57, 211-234, 2003.
  11. Guan S, Zhou YC, Wei GW and Lai CH, Controlling Flow Turbulence, Chaos, 13, 64-70, 2003.
  12. Gu Y, Zhou YC and Wei GW, Conjugate Filters with Spectral-like Resolution for 2D Incompressible Flow, Computers & Fluids, 33, 777-794, 2003.
  13. Zhou YC, Gu Y and Wei GW, Shock-capturing with Natural High Frequency Oscillations, International Journal for Numerical Methods in Fluids, 41, 1319--1338, 2003.
  14. Wan DC, Zhou YC and Wei GW, Numerical Solution of Incompressible Flows by Discrete Singular Convolution, International Journal for Numerical Methods in Fluids, 38, 789-810, 2002.
  15. Yang SY, Zhou YC and Wei GW, Comparison of the Discrete Singular Convolution Algorithm and the Fourier Pseudospectral Method for Solving Partial Difference Equations, Computer Physics Communications, 143, 113-135, 2002.

Review articles

  1. Lu B, Zhou YC, Holst M and McCammoon JA, Recent Progress in Numerical Methods for the Poisson-Boltzmann Equation in Biophysical Applications, Communications in Computational Physics, 3, 973-1009, 2008.

Book sections

  1. Zhou YC and Wei GW, High Resolution Conjugate Filters for Hyperbolic Conservation Laws, In: Hou YT and Tadmor E, Eds. Hyperbolic Problems: Theory, Numerics, Applications. Springer-Verlag: Berlin (2002).