Updated: Nov 18, 2009 Last ten programs upgraded: ssh java R seamonkey firefox gdb tcsh acroread gzip wget A partial list of software in math department, all in /usr/local/bin. These programs have been built on several architectures: Solaris (stokes) Linux (crackshot) Linux (mycroft, PRIMES) Linux x86_64, CentOS 5.4 (peclet) 'all' under 'machines' below refers to these three platforms. Short descriptions of these programs are at the bottom of the file. Program Name Version How to Invoke Machines ------------ ------- ------------- -------- abiword 2.4.6 abiword Linux acroread 8.1.7 acroread Linux alpine 2.00 alpine all bash 4.0 bash all bison 2.4 bison -y all bzip2 1.0.5 bzip2/bunzip2 all coreutils 7.5 various all cpio 2.10 cpio all diffutils 2.8.1 diff all elm 2.4ME+ PL124 (25) elm all emacs 22.3 emacs all enscript 1.6.3 (beta) enscript -2r (e.g) all file 5.03 file all findutils 4.4.2 find all firefox 3.1.5 firefox PRIMES, 64-bit Linux flash plugin 9.0r246 plugin for browsers Linux flex 2.5.35 flex all ftnchek 3.2.2 ftnchek all fvwm2 2.4.20 fvwm2 all g95 0.90 g95 all gap 4r4 gap all gawk 3.1.7 gawk all gcc suite 3.4.6 gcc, g++, g77 all gdb 7.0 gdb all ghostscript 8.64 gs all gnumeric 1.4.3 gnumeric Linux gpg 1.4.9 gpg all grep 2.5.4 grep all groff 1.20.1 groff all gv 3.6.5 gv all gzip 1.3.13 gzip all ispell 3.1.20 ispell all java 1.6.0_17 /usr/local/java/bin/java all kermit 8.0.211 kermit all less 436 less all lynx 2.8.6 lynx all m4 1.4.11 m4 all make 3.81 gmake all maple 13.01 maple/xmaple not PRIMES matlab R2008b matlab Linux mcvert 2.16 mcvert all mpack/munpack 1.5 mpack/munpack all mtools 4.0.11 mdir, mtype ... all mutt 1.5.20 mutt all ncftp 3.2.3 ncftp all octave 2.1.50 octave all patch 2.5.4 patch all perl 5.10.0 perl all pico 4.1 pico all pine 4.64 pine.old all python 2.3.3 python all R 2.10.0 R Linux sage 3.0.6 sage Linux screen 4.0.3 screen all seamonkey 2.0 seamonkey Linux sed 4.2 sed all sharutils 4.6.3 shar,unshar all ssh (openssh) 5.3p1 slogin hostname all star 1.5 star all Sun Compilers See the end of this file tar 1.22 tar all tcsh 6.17.00 tcsh all texinfo 4.13 info all tin 1.8.3 tin all thunderbird 2.0.0.23 thunderbird all top 3.5beta12 top all unrar 3.8.5 unrar all vim 7.2 vim all xkeycaps 2.43 xkeycaps all xnviewMP 0.12 xnview Linux xrn 9.02 xrn all wget 1.12 wget all word2x 0.005 word2x all zip/unzip 3.0 / 5.52 zip / unzip all zmodem 3.48 rz / sz all --- Descriptions: abiword -- lite Microsoft Word clone acroread -- Adobe pdf viewer alpine -- latest version of pine mail program bash -- gnu "bourne again" shell bison --- gnu yacc clone bzip2 -- another file compressor, even better than gzip coreutils -- gnu file, text and shell utilities cpio -- gnu cpio elm -- a friendly interactive mailer emacs -- gnu emacs editor enscript -- convert text files to PostScript, HTML, RTF and others diffutils -- "Diff" utilities, diff, diff3, cmp file -- educated guess as to what a file contains findutils -- gnu find firefox -- Next Generation of Mozilla Browser, was firebird flex -- gnu lex clone ftnchek -- fortran program checker (mostly semantic) fvwm2 -- friendly? (see man page) virtual window manager g95 -- Fortran 95 compiler gap -- Groups, Algorithms and Programming gawk -- gnu awk gcc suite -- gnu C, gnu c++, gnu fortran ... gdb -- gnu debugger ghostscript -- postscript viewer, graphics format converter gnumeric -- Gnome spreadsheet, Excel clone gpg -- Gnu Privacy Guard grep -- gnu grep groff -- gnu Troff gv -- postscript and PDF previewer, front end to ghostscript gzip -- gnu zip; better compression than compress ispell -- interactive spelling checker java -- programming language kermit -- latest version of kermit; supports up to 2K blocks less -- pager, opposite of more lynx -- Ascii WWW browser m4 -- gnu macro processor make -- gnu make maple/xmaple -- Waterloo symbolic math package matlab -- Mathworks matlab mcvert -- Mac binhex 4.0 conversion utility mpack/munpack -- mime (base64) encoder/decoder mtools -- tools for reading/writing MSDOS files to/from floppy mutt -- mail program that combines features from elm, pine and mh ncftp -- a better ftp octave -- matlab clone patch -- gnu patch program; apply patches to source python -- another language, some like it better than perl R -- clone of S-plus sage -- a mathematics software system screen -- multi-vt100 screen manager (do not download when using this) seamonkey -- use instead of netscape or mozilla sed -- gnu sed sharutils -- gnu versions of shar, unshar, uuencode and uudecode ssh -- secure shell; use slogin instead of rlogin or telnet star -- another tar; more standards-compliant than gnu tar tar -- gnu tar tcsh -- a better csh texinfo -- A gnu .info file reader thunderbird -- graphical mail program; the other half of firefox tin -- news reader top -- see top cpu processes unrar -- extract files from .rar archives vim -- vi improved, text editor wget -- non-interactive network downloader word2x -- convert Word documents to text (and latex); don't expect too much xkeycaps -- X interface to xmodmap; remap keys in X xnview -- a free X image displayer (many formats) xrn -- X news reader zip/unzip -- DOS (PKZIP) compatible zip / unzip programs zmodem -- file transfer program ************** Sun Compilers -- Sun Studio 11. This includes f77, f90, f95, cc, CC, and everything else that comes with it, all in /opt/SUNWspro/bin on the Sun machines.
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